Example: GView Results for Job 2

February 9, 2021: Job submission for GView Server is back to normal.

View

The above images are previews of the GView Server analysis. Clicking on the image will display a full size version.

Clicking Launch GView Webstart will open the results in GView, an interactive circular and linear genome viewer, where you can pan, zoom, and interact with the results. GView requires Java 1.6 or greater and at least 512MB of memory.

The Pangenome analysis type displays a pangenome BLAST Atlas of a set of genomes. The reference genome consists of a pangenome constructed by concatenating all the unique regions among each of the uploaded query genomes. A BLAST atlas is then constructed for each query genome. The features in these slots show regions where there is a BLAST hit between the query genome and the constructed pangenome. An example of how to interpret a Pangenome BLAST Atlas can be found on the examples page at Pangenome Atlas Example.

Download

The below table lists a set of downloadable files containing the resulting data of this analysis. There are two types of data that can be downloaded: the GView zip package, and the BLAST results table. The zip package contains all the necessary information to launch GView offline. The BLAST Results table contains the results of the BLAST analyses that were performed on the uploaded data in a tabular format. To launch GView offline, please execute the appropriate QuickLaunch program, either QuickLaunch.bat or QuickLaunch.sh.

FileTypeDescription
gview-all-2.zip GView Data + Executable Contains the resulting data plus the GView executable.
gview-data-2.zip GView Data Contains only the resulting data from the job, not the gview executable.
blast-results-2.csv BLAST Results Table A table of the resulting BLAST hits, in csv format. The results may take a while to download for large data sets.
blast-results-2.xls BLAST Results Table A table of the resulting BLAST hits, in excel format. The results may take a while to download for large data sets.